Result when running AME using 100bp window around `example_chip_summits` for "Increasing" and "Decreasing" sites, using "Static" as background.
example_ameA list object of AME results data.frames
`runAme()` Results object for Increasing sites vs Static sites
`runAme()` Results object for Decreasing sites vs Static sites
# Data can be combined into 1 large data.frame using:
# where the "behavior" column will hold the "Increasing"/"Decreasing" information
dplyr::bind_rows(example_ame, .id = "behavior")
#> # A tibble: 17 × 18
#> behavior rank motif_db motif_id motif_alt_id consensus pvalue adj.pvalue
#> <chr> <int> <chr> <chr> <chr> <chr> <dbl> <dbl>
#> 1 Decreasing 1 /nas/lon… Eip93F_… Eip93F ACWSCCRA… 5.39e-9 0.00000203
#> 2 Decreasing 2 /nas/lon… cad_Fly… cad BTTTWBGAT 6.3 e-8 0.000112
#> 3 Decreasing 3 /nas/lon… CG31670… erm AAAWGMGC… 1.46e-6 0.000805
#> 4 Decreasing 4 /nas/lon… fru-PG_… fru GAAAAAW 8.27e-7 0.00106
#> 5 Decreasing 5 /nas/lon… rn_SANG… rn MRDHSAAA… 2.1 e-5 0.00814
#> 6 Decreasing 6 /nas/lon… exd_Fly… exd TTTNRWTY… 6.97e-6 0.0108
#> 7 Increasing 1 /nas/lon… l(3)neo… l(3)neo38 RGGGGGKG… 9.52e-9 0.00000446
#> 8 Increasing 2 /nas/lon… l(3)neo… l(3)neo38 DGKGGGKG… 1.86e-8 0.0000154
#> 9 Increasing 3 /nas/lon… CG9895_… CG9895 RDTGGGYG… 6.58e-7 0.000239
#> 10 Increasing 4 /nas/lon… CG7368_… CG7368 KDGKGGGD… 5.95e-7 0.000327
#> 11 Increasing 5 /nas/lon… Sp1_SOL… Sp1 VRGKGGGC… 6.91e-7 0.000448
#> 12 Increasing 6 /nas/lon… luna_SO… luna NVAWGGGC… 3.31e-6 0.00175
#> 13 Increasing 7 /nas/lon… CG3065_… CG3065 RGKGGGCG… 4.06e-6 0.00202
#> 14 Increasing 8 /nas/lon… sr_SOLE… sr DBGYGTGG… 3.25e-6 0.00293
#> 15 Increasing 9 /nas/lon… ttk-PA_… ttk CMACCCCTA 9.25e-6 0.00415
#> 16 Increasing 10 /nas/lon… Sp1_SAN… Sp1 GKGGGCGK… 9.46e-6 0.00497
#> 17 Increasing 11 /nas/lon… crol_F7… crol ACCCCCCC… 4.79e-5 0.016
#> # … with 10 more variables: evalue <dbl>, tests <int>, fasta_max <dbl>,
#> # pos <int>, neg <int>, pwm_min <dbl>, tp <int>, tp_percent <dbl>, fp <int>,
#> # fp_percent <dbl>