Convenience function for dropping all columns created by runTomTom prefixed by "best_match_" and the "best_db_name" column. Keeps the "tomtom" data.frame column. Can be useful if you want to unnest the `tomtom` data without propagating these columns.
drop_best_match(res)results of runTomTom
`res` without the tomtom best_match_ columns
data("example_dreme_tomtom")
names(example_dreme_tomtom)
#> [1] "motif" "name" "altname"
#> [4] "family" "organism" "consensus"
#> [7] "alphabet" "strand" "icscore"
#> [10] "nsites" "bkgsites" "pval"
#> [13] "qval" "eval" "type"
#> [16] "bkg" "rank" "seq"
#> [19] "length" "positive_hits" "negative_hits"
#> [22] "unerased_evalue" "positive_total" "negative_total"
#> [25] "pos_frac" "neg_frac" "best_match_name"
#> [28] "best_match_altname" "best_db_name" "best_match_offset"
#> [31] "best_match_pval" "best_match_eval" "best_match_qval"
#> [34] "best_match_strand" "best_match_motif" "tomtom"
names(drop_best_match(example_dreme_tomtom))
#> [1] "motif" "name" "altname" "family"
#> [5] "organism" "consensus" "alphabet" "strand"
#> [9] "icscore" "nsites" "bkgsites" "pval"
#> [13] "qval" "eval" "type" "bkg"
#> [17] "rank" "seq" "length" "positive_hits"
#> [21] "negative_hits" "unerased_evalue" "positive_total" "negative_total"
#> [25] "pos_frac" "neg_frac" "tomtom"